HL_4P6F_216

3D structure

PDB id

4P6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the peptolide 12C bound to bacterial ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGUCAAG

Length

7 nucleotides

Bulged bases

4P6F|1|YA|U|2797

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4P6F_216 not in the Motif Atlas

Geometric match to HL_1P6V_001

Geometric discrepancy: 0.3629

The information below is about HL_1P6V_001

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

4P6F|1|YA|C|2794
4P6F|1|YA|G|2795
4P6F|1|YA|U|2797
4P6F|1|YA|C|2798
4P6F|1|YA|A|2799
4P6F|1|YA|A|2801
4P6F|1|YA|G|2802

Current chains

Chain YA

23S ribosomal RNA

Nearby chains