HL_4P6F_223
3D structure
- PDB id
- 4P6F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the peptolide 12C bound to bacterial ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- GAUUGAAAAUC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4P6F_223 not in the Motif Atlas
- Homologous match to HL_5E81_206
- Geometric discrepancy: 0.2118
- The information below is about HL_5E81_206
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4P6F|1|QY|G|30
4P6F|1|QY|A|31
4P6F|1|QY|U|32
4P6F|1|QY|U|33
4P6F|1|QY|G|34
4P6F|1|QY|A|35
4P6F|1|QY|A|36
4P6F|1|QY|A|37
4P6F|1|QY|A|38
4P6F|1|QY|U|39
4P6F|1|QY|C|40
Current chains
- Chain QY
- E-Site tRNA-Phe or A-Site tRNA-Phe
Nearby chains
- Chain QA
- Small subunit ribosomal RNA; SSU rRNA
- Chain QL
- 30S ribosomal protein S12
- Chain QM
- 30S ribosomal protein S13
- Chain QX
- mRNA
- Chain RA
- Large subunit ribosomal RNA; LSU rRNA
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