3D structure

PDB id
4P6F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the peptolide 12C bound to bacterial ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.6 Å

Loop

Sequence
GAUUGAAAAUC
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4P6F_223 not in the Motif Atlas
Homologous match to HL_5E81_206
Geometric discrepancy: 0.2118
The information below is about HL_5E81_206
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4P6F|1|QY|G|30
4P6F|1|QY|A|31
4P6F|1|QY|U|32
4P6F|1|QY|U|33
4P6F|1|QY|G|34
4P6F|1|QY|A|35
4P6F|1|QY|A|36
4P6F|1|QY|A|37
4P6F|1|QY|A|38
4P6F|1|QY|U|39
4P6F|1|QY|C|40

Current chains

Chain QY
E-Site tRNA-Phe or A-Site tRNA-Phe

Nearby chains

Chain QA
Small subunit ribosomal RNA; SSU rRNA
Chain QL
30S ribosomal protein S12
Chain QM
30S ribosomal protein S13
Chain QX
mRNA
Chain RA
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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