HL_4P70_115

3D structure

PDB id

4P70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Unmodified tRNA Proline (CGG) Bound to Codon CCG on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.68 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4P70_115 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.1203

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39665.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4P70|1|XA|C|320
4P70|1|XA|A|321
4P70|1|XA|C|322
4P70|1|XA|U|323
4P70|1|XA|G|324
4P70|1|XA|A|325
4P70|1|XA|G|326
4P70|1|XA|A|327
4P70|1|XA|C|328
4P70|1|XA|A|329
4P70|1|XA|C|330
4P70|1|XA|G|331
4P70|1|XA|G|332
4P70|1|XA|G|333

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XP

30S ribosomal protein S16

Chain XT

30S ribosomal protein S20