3D structure

PDB id
4P8Z (explore in PDB, NAKB, or RNA 3D Hub)
Description
Speciation of a group I intron into a lariat capping ribozyme
Experimental method
X-RAY DIFFRACTION
Resolution
3.85 Å

Loop

Sequence
CGAAAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_54105.2
Basepair signature
cWW-tSH-R-R
Number of instances in this motif group
298

Unit IDs

4P8Z|1|A|C|157
4P8Z|1|A|G|158
4P8Z|1|A|A|159
4P8Z|1|A|A|160
4P8Z|1|A|A|161
4P8Z|1|A|G|162

Current chains

Chain A
Didymium iridis partial IGS, 18S rRNA gene, I-DirI gene and partial ITS1

Nearby chains

No other chains within 10Å

Coloring options:

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