HL_4P95_004

3D structure

PDB id

4P95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Speciation of a group I intron into a lariat capping ribozyme (Circularly permutated ribozyme)

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CUAACG

Length

6 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_43074.17

Basepair signature

cWW-tSH-R-R

Number of instances in this motif group

257

Unit IDs

4P95|1|A|C|317
4P95|1|A|U|318
4P95|1|A|A|319
4P95|1|A|A|320
4P95|1|A|C|321
4P95|1|A|G|322

Current chains

Chain A

RNA (192-MER)

Nearby chains