HL_4PJO_003
3D structure
- PDB id
- 4PJO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Minimal U1 snRNP
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GAGGUGCACAC
- Length
- 11 nucleotides
- Bulged bases
- 4PJO|1|3|G|19
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_11142.1
- Basepair signature
- cWW-tWW-R-R-R-R-R-R
- Number of instances in this motif group
- 1
Unit IDs
4PJO|1|3|G|17
4PJO|1|3|A|18
4PJO|1|3|G|19
4PJO|1|3|G|20
4PJO|1|3|U|21
4PJO|1|3|G|22
4PJO|1|3|C|23
4PJO|1|3|A|24
4PJO|1|3|C|25
4PJO|1|3|A|26
4PJO|1|3|C|27
Current chains
- Chain 3
- U1 RNA variant (48-MER) with 4-helix junction replaced by kissing loop (HIV-1 (Mal) DIS) and shorter stem-loop 4.
Nearby chains
- Chain M
- U1 small nuclear ribonucleoprotein C
- Chain Y
- RNA (5'-R(*AP*GP*GP*UP*AP*AP*GP*UP*CP*C)-3')
Coloring options: