HL_4PKD_001
3D structure
- PDB id
- 4PKD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- U1-70k in complex with U1 snRNA stem-loops 1 and U1-A RRM in complex with stem-loop 2
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.5 Å
Loop
- Sequence
- CAUUGCACUCCG
- Length
- 12 nucleotides
- Bulged bases
- 4PKD|1|V|U|72
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_98984.5
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 31
Unit IDs
4PKD|1|V|C|64
4PKD|1|V|A|65
4PKD|1|V|U|66
4PKD|1|V|U|67
4PKD|1|V|G|68
4PKD|1|V|C|69
4PKD|1|V|A|70
4PKD|1|V|C|71
4PKD|1|V|U|72
4PKD|1|V|C|73
4PKD|1|V|C|74
4PKD|1|V|G|75
Current chains
- Chain V
- U1 snRNA stem-loops 1 and 2 (55-MER)
Nearby chains
- Chain B
- U1 small nuclear ribonucleoprotein A,U1 small nuclear ribonucleoprotein 70 kDa
Coloring options: