HL_4PQV_002

3D structure

PDB id

4PQV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of an Xrn1-resistant RNA from the 3' untranslated region of a flavivirus (Murray Valley Encephalitis virus)

Experimental method

X-RAY DIFFRACTION

Resolution

2.46 Å

Loop

Sequence

CGCCGAG

Length

7 nucleotides

Bulged bases

4PQV|1|A|A|33

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_65794.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

14

Unit IDs

4PQV|1|A|C|28
4PQV|1|A|G|29
4PQV|1|A|C|30
4PQV|1|A|C|31
4PQV|1|A|G|32
4PQV|1|A|A|33
4PQV|1|A|G|34

Current chains

Chain A

XRN1-resistant flaviviral RNA

Nearby chains