HL_4PR6_001

3D structure

PDB id

4PR6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

A Second Look at the HDV Ribozyme Structure and Dynamics.

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

CUCCUCGCUG

Length

10 nucleotides

Bulged bases

4PR6|1|B|U|123||A, 4PR6|1|B|C|126, 4PR6|1|B|U|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_83808.1

Basepair signature

cWW-tWW-F-F-F

Number of instances in this motif group

4

Unit IDs

4PR6|1|B|C|119
4PR6|1|B|U|120
4PR6|1|B|C|121
4PR6|1|B|C|122
4PR6|1|B|U|123||A
4PR6|1|B|C|124||A
4PR6|1|B|G|125
4PR6|1|B|C|126
4PR6|1|B|U|127
4PR6|1|B|G|128

Current chains

Chain B

HDV RIBOZYME SELF-CLEAVED

Nearby chains