3D structure

PDB id
4PR6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
A Second Look at the HDV Ribozyme Structure and Dynamics.
Experimental method
X-RAY DIFFRACTION
Resolution
2.3 Å

Loop

Sequence
CAUUGCACUCCG
Length
12 nucleotides
Bulged bases (A, C, G, U)
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_31581.5
Basepair signature
cWW-F-F-F-cSH-F-F-F-F
Number of instances in this motif group
3

Unit IDs

4PR6|1|B|C|147
4PR6|1|B|A|148
4PR6|1|B|U|149
4PR6|1|B|U|150
4PR6|1|B|G|151
4PR6|1|B|C|152
4PR6|1|B|A|153
4PR6|1|B|C|154
4PR6|1|B|U|155
4PR6|1|B|C|156
4PR6|1|B|C|157
4PR6|1|B|G|158

Current chains

Chain B
HDV RIBOZYME SELF-CLEAVED

Nearby chains

Chain A
U1 small nuclear ribonucleoprotein A

Coloring options:

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