HL_4PRF_001

3D structure

PDB id

4PRF (explore in PDB, NAKB, or RNA 3D Hub)

Description

A Second Look at the HDV Ribozyme Structure and Dynamics.

Experimental method

X-RAY DIFFRACTION

Resolution

2.39 Å

Loop

Sequence

CUCCUCGCUG

Length

10 nucleotides

Bulged bases

4PRF|1|B|U|123, 4PRF|1|B|C|126, 4PRF|1|B|U|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Pseudoknot

Broad Annotation

No text annotation

Motif group

HL_83808.4

Basepair signature

cWW-tWW-F-F-F

Number of instances in this motif group

3

Unit IDs

4PRF|1|B|C|119
4PRF|1|B|U|120
4PRF|1|B|C|121
4PRF|1|B|C|122
4PRF|1|B|U|123
4PRF|1|B|C|124
4PRF|1|B|G|125
4PRF|1|B|C|126
4PRF|1|B|U|127
4PRF|1|B|G|128

Current chains

Chain B

Hepatitis Delta virus ribozyme

Nearby chains