HL_4PRF_002

3D structure

PDB id

4PRF (explore in PDB, NAKB, or RNA 3D Hub)

Description

A Second Look at the HDV Ribozyme Structure and Dynamics.

Experimental method

X-RAY DIFFRACTION

Resolution

2.39 Å

Loop

Sequence

CAUUGCACUCCG

Length

12 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31581.5

Basepair signature

cWW-F-F-F-cSH-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4PRF|1|B|C|147
4PRF|1|B|A|148
4PRF|1|B|U|149
4PRF|1|B|U|150
4PRF|1|B|G|151
4PRF|1|B|C|152
4PRF|1|B|A|153
4PRF|1|B|C|154
4PRF|1|B|U|155
4PRF|1|B|C|156
4PRF|1|B|C|157
4PRF|1|B|G|158

Current chains

Chain B

Hepatitis Delta virus ribozyme

Nearby chains

Chain A

U1 small nuclear ribonucleoprotein A