HL_4QI2_003

3D structure

PDB id

4QI2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray structure of the ROQ domain from murine Roquin-1 in complex with a 23-mer Tnf-CDE RNA

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUGUG

Length

5 nucleotides

Bulged bases

4QI2|1|G|U|11, 4QI2|1|G|U|13

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46535.1

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

4QI2|1|G|C|10
4QI2|1|G|U|11
4QI2|1|G|G|12
4QI2|1|G|U|13
4QI2|1|G|G|14

Current chains

Chain G

RNA (5'-R(*AP*CP*AP*UP*GP*UP*UP*UP*UP*CP*UP*GP*UP*GP*AP*AP*AP*AP*CP*GP*GP*AP*G)-3')

Nearby chains

Chain C

Roquin-1