HL_4QI2_003
3D structure
- PDB id
- 4QI2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- X-ray structure of the ROQ domain from murine Roquin-1 in complex with a 23-mer Tnf-CDE RNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CUGUG
- Length
- 5 nucleotides
- Bulged bases (A, C, G, U)
- 11U, 13U
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_69858.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 18
Unit IDs
4QI2|1|G|C|10
4QI2|1|G|U|11
4QI2|1|G|G|12
4QI2|1|G|U|13
4QI2|1|G|G|14
Current chains
- Chain G
- RNA (5'-R(*AP*CP*AP*UP*GP*UP*UP*UP*UP*CP*UP*GP*UP*GP*AP*AP*AP*AP*CP*GP*GP*AP*G)-3')
Nearby chains
- Chain C
- Roquin-1
Coloring options: