HL_4TUD_054

3D structure

PDB id

4TUD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ASL-SufJ bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGUUGAG

Length

7 nucleotides

Bulged bases

4TUD|1|RA|U|614, 4TUD|1|RA|G|615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4TUD_054 not in the Motif Atlas

Homologous match to HL_7A0S_019

Geometric discrepancy: 0.31

The information below is about HL_7A0S_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47787.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

10

Unit IDs

4TUD|1|RA|C|611
4TUD|1|RA|G|612
4TUD|1|RA|U|613
4TUD|1|RA|U|614
4TUD|1|RA|G|615
4TUD|1|RA|A|616
4TUD|1|RA|G|617

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RF

50S ribosomal protein L4