3D structure

PDB id
4TUD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of ASL-SufJ bound to Codon ACC-C on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.6 Å

Loop

Sequence
CUUCGG
Length
6 nucleotides
Bulged bases
4TUD|1|RA|U|1693
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4TUD_079 not in the Motif Atlas
Homologous match to HL_5J7L_175
Geometric discrepancy: 0.1382
The information below is about HL_5J7L_175
Detailed Annotation
UNCG
Broad Annotation
No text annotation
Motif group
HL_34617.5
Basepair signature
cWW-tSW-F
Number of instances in this motif group
57

Unit IDs

4TUD|1|RA|C|1691
4TUD|1|RA|U|1692
4TUD|1|RA|U|1693
4TUD|1|RA|C|1694
4TUD|1|RA|G|1695
4TUD|1|RA|G|1696

Current chains

Chain RA
23S rRNA

Nearby chains

Chain QA
Small subunit ribosomal RNA; SSU rRNA
Chain RD
50S ribosomal protein L2

Coloring options:


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