HL_4TUD_086

3D structure

PDB id

4TUD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ASL-SufJ bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

4TUD|1|RA|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4TUD_086 not in the Motif Atlas

Homologous match to HL_4WF9_046

Geometric discrepancy: 0.1882

The information below is about HL_4WF9_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61418.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

8

Unit IDs

4TUD|1|RA|G|1949
4TUD|1|RA|G|1950
4TUD|1|RA|U|1951
4TUD|1|RA|A|1952
4TUD|1|RA|A|1953
4TUD|1|RA|G|1954
4TUD|1|RA|U|1955
4TUD|1|RA|U|1956
4TUD|1|RA|C|1957

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA

Chain RO

50S ribosomal protein L14