HL_4TUD_155

3D structure

PDB id

4TUD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ASL-SufJ bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GUGAAAGCC

Length

9 nucleotides

Bulged bases

4TUD|1|YA|G|329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4TUD_155 not in the Motif Atlas

Homologous match to HL_4WF9_012

Geometric discrepancy: 0.1016

The information below is about HL_4WF9_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

4TUD|1|YA|G|327
4TUD|1|YA|U|328
4TUD|1|YA|G|329
4TUD|1|YA|A|330
4TUD|1|YA|A|331
4TUD|1|YA|A|332
4TUD|1|YA|G|333
4TUD|1|YA|C|334
4TUD|1|YA|C|335

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YF

50S ribosomal protein L4

Chain YY

50S ribosomal protein L24