HL_4TUD_174

3D structure

PDB id

4TUD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ASL-SufJ bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

4TUD|1|YA|A|1096

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4TUD_174 not in the Motif Atlas

Geometric match to HL_2A64_001

Geometric discrepancy: 0.3942

The information below is about HL_2A64_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37569.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

11

Unit IDs

4TUD|1|YA|C|1092
4TUD|1|YA|G|1093
4TUD|1|YA|U|1094
4TUD|1|YA|A|1095
4TUD|1|YA|A|1096
4TUD|1|YA|U|1097
4TUD|1|YA|A|1098
4TUD|1|YA|G|1099

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y9

50S ribosomal protein L36

Chain YH

50S ribosomal protein L6