HL_4TUD_218

3D structure

PDB id

4TUD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ASL-SufJ bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GGUCUCC

Length

7 nucleotides

Bulged bases

4TUD|1|QA|U|841, 4TUD|1|QA|U|843

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4TUD_218 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.2837

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05426.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

4TUD|1|QA|G|837
4TUD|1|QA|G|838
4TUD|1|QA|U|841
4TUD|1|QA|C|842
4TUD|1|QA|U|843
4TUD|1|QA|C|848
4TUD|1|QA|C|849

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QB

30S ribosomal protein S2

Chain QR

30S ribosomal protein S18