HL_4TZP_010
3D structure
- PDB id
- 4TZP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- As Grown, Untreated Co-crystals of the Ternary Complex Containing a T-box Stem I RNA, its cognate tRNAGly, and B. subtilis YbxF protein
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 8.5 Å
Loop
- Sequence
- GGAUAGUGAAAGC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4TZP_010 not in the Motif Atlas
- Geometric match to HL_4LCK_010
- Geometric discrepancy: 0.0558
- The information below is about HL_4LCK_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_86109.1
- Basepair signature
- cWW-F-tWH-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
4TZP|1|F|G|52
4TZP|1|F|G|53
4TZP|1|F|A|54
4TZP|1|F|U|55
4TZP|1|F|A|56
4TZP|1|F|G|57
4TZP|1|F|U|58
4TZP|1|F|G|59
4TZP|1|F|A|60
4TZP|1|F|A|61
4TZP|1|F|A|62
4TZP|1|F|G|63
4TZP|1|F|C|64
Current chains
- Chain F
- glyQ T-box Stem I
Nearby chains
- Chain B
- Transfer RNA; tRNA
- Chain E
- Transfer RNA; tRNA
Coloring options: