HL_4TZZ_006

3D structure

PDB id

4TZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystals of the Ternary Complex Containing a T-box Stem I RNA, its Cognate tRNAGly, and B. subtilis YbxF protein, treated by removing lithium sulfate and increasing PEG3350 concentration from 20% to 45% post crystallization

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

CAGGGUAG*G

Length

9 nucleotides

Bulged bases

4TZZ|1|E|G|17, 4TZZ|1|E|G|18, 4TZZ|1|E|U|19

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4TZZ_006 not in the Motif Atlas

Homologous match to HL_6JXM_001

Geometric discrepancy: 0.1848

The information below is about HL_6JXM_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

4TZZ|1|E|C|13
4TZZ|1|E|A|14
4TZZ|1|E|G|15
4TZZ|1|E|G|17
4TZZ|1|E|G|18
4TZZ|1|E|U|19
4TZZ|1|E|A|20
4TZZ|1|E|G|21
*
4TZZ|1|E|G|21

Current chains

Chain E

engineered tRNAGly

Nearby chains

Chain B

Transfer RNA; tRNA

Chain F

T-box leader