HL_4TZZ_020
3D structure
- PDB id
- 4TZZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystals of the Ternary Complex Containing a T-box Stem I RNA, its Cognate tRNAGly, and B. subtilis YbxF protein, treated by removing lithium sulfate and increasing PEG3350 concentration from 20% to 45% post crystallization
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.64 Å
Loop
- Sequence
- GGAUAGUGAAAGC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4TZZ_020 not in the Motif Atlas
- Geometric match to HL_4LCK_010
- Geometric discrepancy: 0.156
- The information below is about HL_4LCK_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_86109.1
- Basepair signature
- cWW-F-tWH-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
4TZZ|1|L|G|52
4TZZ|1|L|G|53
4TZZ|1|L|A|54
4TZZ|1|L|U|55
4TZZ|1|L|A|56
4TZZ|1|L|G|57
4TZZ|1|L|U|58
4TZZ|1|L|G|59
4TZZ|1|L|A|60
4TZZ|1|L|A|61
4TZZ|1|L|A|62
4TZZ|1|L|G|63
4TZZ|1|L|C|64
Current chains
- Chain L
- T-box Stem I RNA
Nearby chains
- Chain K
- Transfer RNA; tRNA
Coloring options: