HL_4U1U_222

3D structure

PDB id

4U1U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to quinupristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GGCAAAUCC

Length

9 nucleotides

Bulged bases

4U1U|1|DA|C|1493, 4U1U|1|DA|U|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U1U_222 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3639

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

4U1U|1|DA|G|1491
4U1U|1|DA|G|1492
4U1U|1|DA|C|1493
4U1U|1|DA|A|1494
4U1U|1|DA|A|1495
4U1U|1|DA|A|1496
4U1U|1|DA|U|1497
4U1U|1|DA|C|1498
4U1U|1|DA|C|1499

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DC

50S ribosomal protein L2