3D structure

PDB id
4U1V (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli ribosome bound to linopristin.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GUCCGGC
Length
7 nucleotides
Bulged bases
4U1V|1|AA|C|1136, 4U1V|1|AA|G|1139
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4U1V_026 not in the Motif Atlas
Geometric match to HL_5J7L_025
Geometric discrepancy: 0.2945
The information below is about HL_5J7L_025
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_87954.2
Basepair signature
cWW-tSW-F
Number of instances in this motif group
7

Unit IDs

4U1V|1|AA|G|1134
4U1V|1|AA|U|1135
4U1V|1|AA|C|1136
4U1V|1|AA|C|1137
4U1V|1|AA|G|1138
4U1V|1|AA|G|1139
4U1V|1|AA|C|1140

Current chains

Chain AA
16S rRNA

Nearby chains

Chain AI
30S ribosomal protein S9

Coloring options:


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