HL_4U1V_053

3D structure

PDB id

4U1V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to linopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGUAACAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U1V_053 not in the Motif Atlas

Homologous match to HL_5J7L_154

Geometric discrepancy: 0.1624

The information below is about HL_5J7L_154

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

4U1V|1|BA|G|712
4U1V|1|BA|G|713
4U1V|1|BA|U|714
4U1V|1|BA|A|715
4U1V|1|BA|A|716
4U1V|1|BA|C|717
4U1V|1|BA|A|718
4U1V|1|BA|C|719

Current chains

Chain BA

23S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AO

30S ribosomal protein S15