HL_4U1V_087

3D structure

PDB id

4U1V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to linopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U1V_087 not in the Motif Atlas

Homologous match to HL_7RQB_055

Geometric discrepancy: 0.2521

The information below is about HL_7RQB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.3

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4U1V|1|BA|G|2303
4U1V|1|BA|G|2304
4U1V|1|BA|U|2305
4U1V|1|BA|C|2306
4U1V|1|BA|G|2307
4U1V|1|BA|G|2308
4U1V|1|BA|A|2309
4U1V|1|BA|C|2310
4U1V|1|BA|A|2311
4U1V|1|BA|U|2312
4U1V|1|BA|C|2313

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BF

50S ribosomal protein L5