HL_4U1V_115

3D structure

PDB id

4U1V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to linopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AGUUAAUACCU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U1V_115 not in the Motif Atlas

Geometric match to HL_5E6M_002

Geometric discrepancy: 0.3677

The information below is about HL_5E6M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38808.1

Basepair signature

cWW-cWW

Number of instances in this motif group

4

Unit IDs

4U1V|1|CA|A|461
4U1V|1|CA|G|462
4U1V|1|CA|U|463
4U1V|1|CA|U|464
4U1V|1|CA|A|465
4U1V|1|CA|A|466
4U1V|1|CA|U|467
4U1V|1|CA|A|468
4U1V|1|CA|C|469
4U1V|1|CA|C|470
4U1V|1|CA|U|471

Current chains

Chain CA

16S rRNA

Nearby chains