HL_4U1V_171

3D structure

PDB id

4U1V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to linopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

4U1V|1|DA|A|1453, 4U1V|1|DA|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U1V_171 not in the Motif Atlas

Geometric match to HL_5U30_001

Geometric discrepancy: 0.1924

The information below is about HL_5U30_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

4U1V|1|DA|C|1451
4U1V|1|DA|G|1452
4U1V|1|DA|A|1453
4U1V|1|DA|C|1454
4U1V|1|DA|G|1455
4U1V|1|DA|G|1456
4U1V|1|DA|U|1457
4U1V|1|DA|U|1458
4U1V|1|DA|G|1459

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DN

50S ribosomal protein L17