HL_4U1V_175

3D structure

PDB id

4U1V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to linopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

4U1V|1|DA|A|1616, 4U1V|1|DA|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U1V_175 not in the Motif Atlas

Homologous match to HL_7A0S_040

Geometric discrepancy: 0.1087

The information below is about HL_7A0S_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89567.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

4U1V|1|DA|C|1612
4U1V|1|DA|G|1613
4U1V|1|DA|A|1614
4U1V|1|DA|C|1615
4U1V|1|DA|A|1616
4U1V|1|DA|C|1617
4U1V|1|DA|A|1618
4U1V|1|DA|G|1619

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D2

50S ribosomal protein L34

Chain DS

50S ribosomal protein L22