HL_4U20_026

3D structure

PDB id

4U20 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to flopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUCCGGC

Length

7 nucleotides

Bulged bases

4U20|1|AA|C|1136, 4U20|1|AA|G|1139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U20_026 not in the Motif Atlas

Geometric match to HL_5J7L_025

Geometric discrepancy: 0.254

The information below is about HL_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87954.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

4U20|1|AA|G|1134
4U20|1|AA|U|1135
4U20|1|AA|C|1136
4U20|1|AA|C|1137
4U20|1|AA|G|1138
4U20|1|AA|G|1139
4U20|1|AA|C|1140

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AI

30S ribosomal protein S9