HL_4U20_115

3D structure

PDB id

4U20 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to flopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U20_115 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.1755

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

4U20|1|CA|G|462
4U20|1|CA|U|463
4U20|1|CA|U|464
4U20|1|CA|A|465
4U20|1|CA|A|466
4U20|1|CA|U|467
4U20|1|CA|A|468
4U20|1|CA|C|469
4U20|1|CA|C|470

Current chains

Chain CA

16S rRNA

Nearby chains