HL_4U20_139

3D structure

PDB id

4U20 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to flopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UUUCGA

Length

6 nucleotides

Bulged bases

4U20|1|DA|U|138

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U20_139 not in the Motif Atlas

Homologous match to HL_5J7L_137

Geometric discrepancy: 0.1172

The information below is about HL_5J7L_137

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32392.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

4U20|1|DA|U|137
4U20|1|DA|U|138
4U20|1|DA|U|139
4U20|1|DA|C|140
4U20|1|DA|G|141
4U20|1|DA|A|142

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DT

50S ribosomal protein L23