HL_4U20_225
3D structure
- PDB id
- 4U20 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the E. coli ribosome bound to flopristin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- UGGUCGGACAUCA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4U20_225 not in the Motif Atlas
- Geometric match to HL_1FIR_001
- Geometric discrepancy: 0.3314
- The information below is about HL_1FIR_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20811.1
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 18
Unit IDs
4U20|1|DA|U|2302
4U20|1|DA|G|2303
4U20|1|DA|G|2304
4U20|1|DA|U|2305
4U20|1|DA|C|2306
4U20|1|DA|G|2307
4U20|1|DA|G|2308
4U20|1|DA|A|2309
4U20|1|DA|C|2310
4U20|1|DA|A|2311
4U20|1|DA|U|2312
4U20|1|DA|C|2313
4U20|1|DA|A|2314
Current chains
- Chain DA
- 23S rRNA
Nearby chains
- Chain DB
- 5S ribosomal RNA; 5S rRNA
- Chain DF
- 50S ribosomal protein L5
Coloring options: