HL_4U24_048

3D structure

PDB id

4U24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to dalfopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGCUUAGGCG

Length

10 nucleotides

Bulged bases

4U24|1|BA|U|546, 4U24|1|BA|G|549

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U24_048 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.1567

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

4U24|1|BA|C|542
4U24|1|BA|G|543
4U24|1|BA|C|544
4U24|1|BA|U|545
4U24|1|BA|U|546
4U24|1|BA|A|547
4U24|1|BA|G|548
4U24|1|BA|G|549
4U24|1|BA|C|550
4U24|1|BA|G|551

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BJ

50S ribosomal protein L13

Chain BR

50S ribosomal protein L21