HL_4U24_122

3D structure

PDB id

4U24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to dalfopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CCCUUGAGG

Length

9 nucleotides

Bulged bases

4U24|1|CA|U|842

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U24_122 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.2972

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

4U24|1|CA|C|839
4U24|1|CA|C|840
4U24|1|CA|C|841
4U24|1|CA|U|842
4U24|1|CA|U|843
4U24|1|CA|G|844
4U24|1|CA|A|845
4U24|1|CA|G|846
4U24|1|CA|G|847

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CB

30S ribosomal protein S2

Chain CR

30S ribosomal protein S18