HL_4U24_178

3D structure

PDB id

4U24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to dalfopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CCUCGCG

Length

7 nucleotides

Bulged bases

4U24|1|DA|U|1729, 4U24|1|DA|C|1732

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U24_178 not in the Motif Atlas

Geometric match to HL_1P6V_001

Geometric discrepancy: 0.3721

The information below is about HL_1P6V_001

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

4U24|1|DA|C|1727
4U24|1|DA|C|1728
4U24|1|DA|U|1729
4U24|1|DA|C|1730
4U24|1|DA|G|1731
4U24|1|DA|C|1732
4U24|1|DA|G|1733

Current chains

Chain DA

23S rRNA

Nearby chains