HL_4U24_214

3D structure

PDB id

4U24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to dalfopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGAGGCUUUGAAGUGUGGACGCCAGUCUGCAUGGAGCCGACCUUGAAAUAC

Length

51 nucleotides

Bulged bases

4U24|1|BA|G|2127, 4U24|1|BA|U|2132, 4U24|1|BA|C|2145, 4U24|1|BA|C|2161, 4U24|1|BA|C|2164, 4U24|1|BA|C|2165, 4U24|1|BA|U|2172

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U24|1|BA|G|2124
4U24|1|BA|G|2125
4U24|1|BA|A|2126
4U24|1|BA|G|2127
4U24|1|BA|G|2128
4U24|1|BA|C|2129
4U24|1|BA|U|2130
4U24|1|BA|U|2131
4U24|1|BA|U|2132
4U24|1|BA|G|2133
4U24|1|BA|A|2134
4U24|1|BA|A|2135
4U24|1|BA|G|2136
4U24|1|BA|U|2137
4U24|1|BA|G|2138
4U24|1|BA|U|2139
4U24|1|BA|G|2140
4U24|1|BA|G|2141
4U24|1|BA|A|2142
4U24|1|BA|C|2143
4U24|1|BA|G|2144
4U24|1|BA|C|2145
4U24|1|BA|C|2146
4U24|1|BA|A|2147
4U24|1|BA|G|2148
4U24|1|BA|U|2149
4U24|1|BA|C|2150
4U24|1|BA|U|2151
4U24|1|BA|G|2152
4U24|1|BA|C|2153
4U24|1|BA|A|2154
4U24|1|BA|U|2155
4U24|1|BA|G|2156
4U24|1|BA|G|2157
4U24|1|BA|A|2158
4U24|1|BA|G|2159
4U24|1|BA|C|2160
4U24|1|BA|C|2161
4U24|1|BA|G|2162
4U24|1|BA|A|2163
4U24|1|BA|C|2164
4U24|1|BA|C|2165
4U24|1|BA|U|2166
4U24|1|BA|U|2167
4U24|1|BA|G|2168
4U24|1|BA|A|2169
4U24|1|BA|A|2170
4U24|1|BA|A|2171
4U24|1|BA|U|2172
4U24|1|BA|A|2173
4U24|1|BA|C|2174

Current chains

Chain BA

23S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AK

30S ribosomal protein S11

Chain B5

50S ribosomal protein L1