HL_4U25_005

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CCUUCGGG

Length

8 nucleotides

Bulged bases

4U25|1|AA|U|209

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U25_005 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.292

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

4U25|1|AA|C|206
4U25|1|AA|C|207
4U25|1|AA|U|208
4U25|1|AA|U|209
4U25|1|AA|C|210
4U25|1|AA|G|211
4U25|1|AA|G|212
4U25|1|AA|G|213

Current chains

Chain AA

16S rRNA

Nearby chains