HL_4U25_042

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAUAC

Length

5 nucleotides

Bulged bases

4U25|1|BA|U|321, 4U25|1|BA|A|322

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U25_042 not in the Motif Atlas

Homologous match to HL_5J7L_143

Geometric discrepancy: 0.0645

The information below is about HL_5J7L_143

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

4U25|1|BA|G|319
4U25|1|BA|A|320
4U25|1|BA|U|321
4U25|1|BA|A|322
4U25|1|BA|C|323

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BE

50S ribosomal protein L4