HL_4U25_059

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U25_059 not in the Motif Atlas

Homologous match to HL_4WF9_028

Geometric discrepancy: 0.1887

The information below is about HL_4WF9_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42998.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4U25|1|BA|G|978
4U25|1|BA|A|979
4U25|1|BA|A|980
4U25|1|BA|A|981
4U25|1|BA|C|982
4U25|1|BA|A|983
4U25|1|BA|A|984
4U25|1|BA|C|985

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BQ

50S ribosomal protein L20

Chain BR

50S ribosomal protein L21

Chain BZ

50S ribosomal protein L30