HL_4U25_065

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUUAAUC

Length

7 nucleotides

Bulged bases

4U25|1|BA|U|1325, 4U25|1|BA|U|1329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U25_065 not in the Motif Atlas

Homologous match to HL_5J7L_166

Geometric discrepancy: 0.091

The information below is about HL_5J7L_166

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

4U25|1|BA|G|1324
4U25|1|BA|U|1325
4U25|1|BA|U|1326
4U25|1|BA|A|1327
4U25|1|BA|A|1328
4U25|1|BA|U|1329
4U25|1|BA|C|1330

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BN

50S ribosomal protein L17

Chain BS

50S ribosomal protein L22