HL_4U25_101

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

4U25|1|BA|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U25_101 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.057

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4U25|1|BA|G|2819
4U25|1|BA|A|2820
4U25|1|BA|A|2821
4U25|1|BA|G|2822
4U25|1|BA|A|2823
4U25|1|BA|C|2824
4U25|1|BA|G|2825
4U25|1|BA|A|2826
4U25|1|BA|C|2827

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BN

50S ribosomal protein L17