HL_4U25_130

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UGAUAAA

Length

7 nucleotides

Bulged bases

4U25|1|CA|U|1168

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U25_130 not in the Motif Atlas

Homologous match to HL_5J7L_026

Geometric discrepancy: 0.2567

The information below is about HL_5J7L_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_93535.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

4U25|1|CA|U|1165
4U25|1|CA|G|1166
4U25|1|CA|A|1167
4U25|1|CA|U|1168
4U25|1|CA|A|1169
4U25|1|CA|A|1170
4U25|1|CA|A|1171

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CB

30S ribosomal protein S2