HL_4U25_133

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGAUCAGAAUGCC

Length

13 nucleotides

Bulged bases

4U25|1|CA|U|1364

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U25|1|CA|G|1355
4U25|1|CA|G|1356
4U25|1|CA|A|1357
4U25|1|CA|U|1358
4U25|1|CA|C|1359
4U25|1|CA|A|1360
4U25|1|CA|G|1361
4U25|1|CA|A|1362
4U25|1|CA|A|1363
4U25|1|CA|U|1364
4U25|1|CA|G|1365
4U25|1|CA|C|1366
4U25|1|CA|C|1367

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CC

30S ribosomal protein S3

Chain CI

30S ribosomal protein S9

Chain CJ

30S ribosomal protein S10

Chain CN

30S ribosomal protein S14