HL_4U25_141

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

4U25|1|DA|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U25_141 not in the Motif Atlas

Geometric match to HL_5J7L_139

Geometric discrepancy: 0.106

The information below is about HL_5J7L_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4U25|1|DA|G|194
4U25|1|DA|A|195
4U25|1|DA|A|196
4U25|1|DA|A|197
4U25|1|DA|C|198
4U25|1|DA|A|199
4U25|1|DA|U|200
4U25|1|DA|C|201

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DL

50S ribosomal protein L15

Chain DX

50S ribosomal protein L28