HL_4U25_171
3D structure
- PDB id
- 4U25 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the E. coli ribosome bound to virginiamycin M1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CGACGGUUG
- Length
- 9 nucleotides
- Bulged bases
- 4U25|1|DA|A|1453, 4U25|1|DA|C|1454
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4U25_171 not in the Motif Atlas
- Geometric match to HL_4L8H_001
- Geometric discrepancy: 0.2085
- The information below is about HL_4L8H_001
- Detailed Annotation
- Mini UNCG
- Broad Annotation
- No text annotation
- Motif group
- HL_48778.2
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 46
Unit IDs
4U25|1|DA|C|1451
4U25|1|DA|G|1452
4U25|1|DA|A|1453
4U25|1|DA|C|1454
4U25|1|DA|G|1455
4U25|1|DA|G|1456
4U25|1|DA|U|1457
4U25|1|DA|U|1458
4U25|1|DA|G|1459
Current chains
- Chain DA
- 23S rRNA
Nearby chains
- Chain DN
- 50S ribosomal protein L17
Coloring options: