HL_4U25_185
3D structure
- PDB id
- 4U25 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the E. coli ribosome bound to virginiamycin M1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GUGAAGAUGC
- Length
- 10 nucleotides
- Bulged bases
- 4U25|1|DA|A|2030, 4U25|1|DA|A|2031, 4U25|1|DA|G|2032
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4U25_185 not in the Motif Atlas
- Homologous match to HL_4WF9_047
- Geometric discrepancy: 0.1285
- The information below is about HL_4WF9_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_61996.3
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
4U25|1|DA|G|2027
4U25|1|DA|U|2028
4U25|1|DA|G|2029
4U25|1|DA|A|2030
4U25|1|DA|A|2031
4U25|1|DA|G|2032
4U25|1|DA|A|2033
4U25|1|DA|U|2034
4U25|1|DA|G|2035
4U25|1|DA|C|2036
Current chains
- Chain DA
- 23S rRNA
Nearby chains
- Chain D0
- 50S ribosomal protein L32
- Chain DD
- 50S ribosomal protein L3
- Chain DJ
- 50S ribosomal protein L13
- Chain DR
- 50S ribosomal protein L21
Coloring options: