HL_4U25_188

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

4U25|1|DA|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U25_188 not in the Motif Atlas

Homologous match to HL_5J7L_186

Geometric discrepancy: 0.0834

The information below is about HL_5J7L_186

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

4U25|1|DA|C|2248
4U25|1|DA|U|2249
4U25|1|DA|G|2250
4U25|1|DA|G|2251
4U25|1|DA|G|2252
4U25|1|DA|G|2253
4U25|1|DA|C|2254
4U25|1|DA|G|2255
4U25|1|DA|G|2256

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DM

50S ribosomal protein L16

Chain DW

50S ribosomal protein L27