HL_4U25_215

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUUUGAAGUGUGGACGCCAGUCUGCAUGGAG

Length

31 nucleotides

Bulged bases

4U25|1|BA|U|2132, 4U25|1|BA|C|2145

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U25|1|BA|C|2129
4U25|1|BA|U|2130
4U25|1|BA|U|2131
4U25|1|BA|U|2132
4U25|1|BA|G|2133
4U25|1|BA|A|2134
4U25|1|BA|A|2135
4U25|1|BA|G|2136
4U25|1|BA|U|2137
4U25|1|BA|G|2138
4U25|1|BA|U|2139
4U25|1|BA|G|2140
4U25|1|BA|G|2141
4U25|1|BA|A|2142
4U25|1|BA|C|2143
4U25|1|BA|G|2144
4U25|1|BA|C|2145
4U25|1|BA|C|2146
4U25|1|BA|A|2147
4U25|1|BA|G|2148
4U25|1|BA|U|2149
4U25|1|BA|C|2150
4U25|1|BA|U|2151
4U25|1|BA|G|2152
4U25|1|BA|C|2153
4U25|1|BA|A|2154
4U25|1|BA|U|2155
4U25|1|BA|G|2156
4U25|1|BA|G|2157
4U25|1|BA|A|2158
4U25|1|BA|G|2159

Current chains

Chain BA

23S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AK

30S ribosomal protein S11

Chain B5

50S ribosomal protein L1

Chain CA

Small subunit ribosomal RNA; SSU rRNA