HL_4U25_219

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

4U25|1|CA|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U25_219 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.2492

The information below is about HL_5J7L_012

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

4U25|1|CA|G|462
4U25|1|CA|U|463
4U25|1|CA|U|464
4U25|1|CA|A|465
4U25|1|CA|A|466
4U25|1|CA|U|467
4U25|1|CA|A|468
4U25|1|CA|C|469
4U25|1|CA|C|470

Current chains

Chain CA

16S rRNA

Nearby chains